RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

cydB

Summary:

Name ID Genomic annotation Chromosome Strand
cydB EG10174 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 179 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 120 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 2 137 0.00 -0.50 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction Show interaction
motA.5UTR 5UTR Show interaction