RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gatA

Summary:

Name ID Genomic annotation Chromosome Strand
gatA EG12414 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 39 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 2 374 0.50 0.00 4
Iron Limitation (Melamed et al. 2016) 1 26 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
hupB CDS Show interaction
hupB.5UTR 5UTR Show interaction Show interaction
micA sRNA Show interaction