RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

rdoA

Summary:

Name ID Genomic annotation Chromosome Strand
rdoA EG11831 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 21 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 2 62 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 1 19 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction
micA sRNA Show interaction Show interaction Show interaction