RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hybO.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
hybO.5UTR G7554.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 25 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 25 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 25 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
micA sRNA Show interaction
minE.ycgI.IGR IGR Show interaction
ryhB sRNA Show interaction