RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gadY

Summary:

Name ID Genomic annotation Chromosome Strand
gadY G0-8914 cASt chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 1.00 0.00 8
Stat. Phase (Melamed et al. 2016) 11 210 0.73 0.64 8
Iron Limitation (Melamed et al. 2016) 1 11 1.00 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
alaE CDS Show interaction
dctA CDS Show interaction
dnaJ CDS Show interaction
hdeA CDS Show interaction
hybO CDS Show interaction
nlpD.5UTR 5UTR Show interaction
pcm CDS Show interaction Show interaction
polA.spf.IGR IGR Show interaction
ryjA sRNA Show interaction
sdhC CDS Show interaction
yjbB CDS Show interaction
yqaE CDS Show interaction