RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

pcm

Summary:

Name ID Genomic annotation Chromosome Strand
pcm EG10689 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 37 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 11 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
gadY cASt Show interaction Show interaction