RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ytfQ.ytfR.IGT

Flanking gene IDs:

  • EG12517
  • EG12518

Summary:

Name ID Genomic annotation Chromosome Strand
ytfQ.ytfR.IGT EG12517.EG12518.IGT IGT chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 322 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 12826 1.00 0.00 5
Iron Limitation (Melamed et al. 2016) 1 702 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction