RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

tnaC

Summary:

Name ID Genomic annotation Chromosome Strand
tnaC EG11276 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 35 0.00 -1.00 7
Stat. Phase (Melamed et al. 2016) 1 10 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 2 253 0.50 0.00 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction
icd.5UTR 5UTR Show interaction
ompF CDS Show interaction