RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Summary:

Name ID Genomic annotation Chromosome Strand
blr G0-9561 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 62 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 33 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 106 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction