RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ligA

Summary:

Name ID Genomic annotation Chromosome Strand
ligA EG10534 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 51 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 123 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 1 108 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction