RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

btuE.btuC.IGT

Flanking gene IDs:

  • EG10129
  • EG10127

Summary:

Name ID Genomic annotation Chromosome Strand
btuE.btuC.IGT EG10129.EG10127.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 20 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 48 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 1 78 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction