RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

emrA

Summary:

Name ID Genomic annotation Chromosome Strand
emrA EG11354 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 41 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 112 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 2 102 0.00 -0.50 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction