RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

crp

Summary:

Name ID Genomic annotation Chromosome Strand
crp EG10164 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 91 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 1 485 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 1 337 1.00 0.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction