RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ybgE

Summary:

Name ID Genomic annotation Chromosome Strand
ybgE EG12395 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 26 0.00 -1.00 6
Stat. Phase (Melamed et al. 2016) 1 272 0.00 -1.00 6
Iron Limitation (Melamed et al. 2016) 1 25 0.00 -1.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction