RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - gatC interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gatC cpxP.3UTR CDS 3UTR chr - 2173391 2173475 chr + 4106218 4106387 42 6.6
gatC cpxP.3UTR CDS 3UTR chr - 2173787 2174275 chr + 4106318 4106388 151 2.8

cpxP.3UTR reads

gatC reads