RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

secM

Summary:

Name ID Genomic annotation Chromosome Strand
secM EG11087 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 28 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 109 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 20 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction