RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - hupB.5UTR interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
hupB.5UTR cpxP.3UTR 5UTR 3UTR chr + 461305 461475 chr + 4106324 4106388 459 3.7
cpxP.3UTR hupB.5UTR 3UTR 5UTR chr + 4106302 4106344 chr + 461347 461456 168 4.0

cpxP.3UTR reads

hupB.5UTR reads