RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - glpK interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
glpK cpxP.3UTR CDS 3UTR chr - 4116296 4116376 chr + 4106353 4106387 90 41.3
glpK cpxP.3UTR CDS 3UTR chr - 4116381 4116561 chr + 4106357 4106387 62 6.0
cpxP.3UTR glpK 3UTR CDS chr + 4106276 4106348 chr - 4116279 4116477 37 6.0

cpxP.3UTR reads

glpK reads