RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

waaP

Summary:

Name ID Genomic annotation Chromosome Strand
waaP EG11340 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 77 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 2 29 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 1 78 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arrS cASt Show interaction
cpxP.3UTR 3UTR Show interaction
gcvB sRNA Show interaction Show interaction