RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - hupB.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
hupB.5UTR cpxP.3UTR 5UTR 3UTR chr + 461312 461744 chr + 4105983 4106388 988 5.9
cpxP.3UTR hupB.5UTR 3UTR 5UTR chr + 4106327 4106345 chr + 461348 461476 383 21.7

cpxP.3UTR reads

hupB.5UTR reads