RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - hupB.5UTR interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
hupB.5UTR cpxP.3UTR 5UTR 3UTR chr + 461306 461754 chr + 4106214 4106388 2697 6.9
cpxP.3UTR hupB.5UTR 3UTR 5UTR chr + 4106302 4106345 chr + 461348 461475 227 5.5

cpxP.3UTR reads

hupB.5UTR reads