RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

bamA.skp.IGT

Flanking gene IDs:

  • G6093
  • EG10455

Summary:

Name ID Genomic annotation Chromosome Strand
bamA.skp.IGT G6093.EG10455.IGT IGT chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 100 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 1 897 1.00 0.00 3
Iron Limitation (Melamed et al. 2016) 1 586 1.00 0.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction