RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

bamA.skp.IGT - cpxP.3UTR interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
cpxP.3UTR bamA.skp.IGT 3UTR IGT chr + 4106330 4106343 chr + 200415 200495 16 16.5
bamA.skp.IGT cpxP.3UTR IGT 3UTR chr + 200305 200498 chr + 4106342 4106387 84 38.1

bamA.skp.IGT reads

cpxP.3UTR reads