RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yggN.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
yggN.5UTR EG12705.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 13 1.00 0.00 6
Stat. Phase (Melamed et al. 2016) 2 94 0.50 0.00 6
Iron Limitation (Melamed et al. 2016) 1 21 1.00 0.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
ompA.5UTR 5UTR Show interaction Show interaction Show interaction