RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - oppA interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
oppA cpxP.3UTR CDS 3UTR chr + 1301177 1301276 chr + 4106324 4106388 300 16.2
oppA cpxP.3UTR CDS 3UTR chr + 1302680 1302774 chr + 4106370 4106388 28 6.4

cpxP.3UTR reads

oppA reads