RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

kgtP.EST5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
kgtP.EST5UTR EG10522.EST5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 78 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 4 521 0.00 -0.25 3
Iron Limitation (Melamed et al. 2016) 1 156 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arrS cASt Show interaction
cpxP.3UTR 3UTR Show interaction Show interaction
omrA sRNA Show interaction
yihO CDS Show interaction
yrbL.EST3UTR 3UTR Show interaction