RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

nrfA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
nrfA.5UTR EG11781.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 3 379 0.00 -0.33 6
Stat. Phase (Melamed et al. 2016) 1 93 0.00 -1.00 6
Iron Limitation (Melamed et al. 2016) 1 12 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction
frdA CDS Show interaction
motA.5UTR 5UTR Show interaction