RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - glpK interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
glpK cpxP.3UTR CDS 3UTR chr - 4116081 4116570 chr + 4106040 4106389 1498 11.7
glpK cpxP.3UTR CDS 3UTR chr - 4116011 4116072 chr + 4106341 4106387 76 4.5
cpxP.3UTR glpK 3UTR CDS chr + 4106285 4106350 chr - 4116379 4116477 109 5.9

cpxP.3UTR reads

glpK reads