RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cpxP.3UTR - glpT interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
glpT cpxP.3UTR CDS 3UTR chr - 2351879 2352370 chr + 4106316 4106388 438 5.2
glpT cpxP.3UTR CDS 3UTR chr - 2351681 2351871 chr + 4106296 4106387 168 3.1
glpT cpxP.3UTR CDS 3UTR chr - 2350987 2351277 chr + 4106331 4106388 227 9.0
glpT cpxP.3UTR CDS 3UTR chr - 2351279 2351475 chr + 4106323 4106387 46 2.5

cpxP.3UTR reads

glpT reads