RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

lpp.EST3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
lpp.EST3UTR EG10544.EST3UTR 3UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 291 1.00 0.00 8
Stat. Phase (Melamed et al. 2016) 1 388 1.00 0.00 8
Iron Limitation (Melamed et al. 2016) 2 1196 1.00 0.50 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gdhA CDS Show interaction
sroC ncRNA Show interaction Show interaction Show interaction