RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
nuoM
arcZ
CDS
sRNA
chr
-
2392935
2393021
chr
+
3350662
3350698
23
9.6
aspA
arcZ
CDS
sRNA
chr
-
4368288
4368376
chr
+
3350663
3350698
187
9.5
argQ.yqaB.IGR
arcZ
IGR
sRNA
chr
-
2817736
2817775
chr
+
3350678
3350698
30
12.1
argQ.argZ.IGT
arcZ
IGT
sRNA
chr
-
2817999
2818060
chr
+
3350614
3350698
63
10.1
tnaA
arcZ
CDS
sRNA
chr
+
3888995
3889057
chr
+
3350679
3350698
150
5.4
ompC
arcZ
CDS
sRNA
chr
-
2312279
2312377
chr
+
3350674
3350698
96
3.1
cspD
arcZ
CDS
sRNA
chr
-
922443
922541
chr
+
3350678
3350697
21
5.0
tnaC
arcZ
CDS
sRNA
chr
+
3888036
3888477
chr
+
3350674
3350697
35
5.9
gcvB
aroC.prmB.IGT
sRNA
IGT
chr
+
2942695
2942778
chr
-
2447380
2447572
231
2.0
flgH
asnW.yeeN.IGR
CDS
IGR
chr
+
1135595
1135672
chr
-
2057929
2057936
48
7185.6
cpxP.3UTR
bamA.skp.IGT
3UTR
IGT
chr
+
4106330
4106343
chr
+
200415
200495
16
16.5
gcvB
bamD
sRNA
CDS
chr
+
2942695
2942741
chr
+
2736879
2736931
32
5.8
micA
bamE
sRNA
CDS
chr
+
2814800
2814831
chr
+
2753937
2753941
18
16.3
ompC.5UTR
bhsA
5UTR
CDS
chr
-
2312782
2312830
chr
+
1169320
1169403
27
105.6
ompF.5UTR
bhsA
5UTR
CDS
chr
-
986982
987093
chr
+
1169317
1169402
17
8.0
arcZ
blr
sRNA
CDS
chr
+
3350641
3350651
chr
+
1704681
1704751
26
4.9
fnrS
chaA
sRNA
CDS
chr
+
1409128
1409134
chr
-
1271806
1271850
14
11.8
raiA
cheB
CDS
CDS
chr
+
2737190
2737326
chr
-
1967420
1967544
13
19.1
chiP.5UTR
chiX
5UTR
sRNA
chr
+
708232
708652
chr
+
507225
507290
47374
1.7
arcZ
clpS
sRNA
CDS
chr
+
3350624
3350656
chr
+
923080
923140
24
11.6
1
2
3
4
5
6
7
8
...
52
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Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10