RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

aroC.prmB.IGT

Flanking gene IDs:

  • EG10075
  • EG12449

Summary:

Name ID Genomic annotation Chromosome Strand
aroC.prmB.IGT EG10075.EG12449.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 1043 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 1 185 1.00 0.00 3
Iron Limitation (Melamed et al. 2016) 1 1592 1.00 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction