RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
ompF
arcZ
CDS
sRNA
chr
-
986781
986876
chr
+
3350653
3350699
720
5.3
uup
arcZ
CDS
sRNA
chr
+
1010634
1010866
chr
+
3350677
3350697
17
6.3
lptF
arcZ
CDS
sRNA
chr
+
4486689
4486829
chr
+
3350663
3350698
16
10.1
gcvT
arcZ
CDS
sRNA
chr
-
3050485
3050555
chr
+
3350667
3350697
62
3.0
sucD
arcZ
CDS
sRNA
chr
+
764178
764227
chr
+
3350664
3350698
45
2.9
crp
arcZ
CDS
sRNA
chr
+
3486181
3486210
chr
+
3350652
3350699
91
12.1
fliF
arcZ
CDS
sRNA
chr
+
2013790
2013876
chr
+
3350677
3350697
33
6.2
cspF.ydfT.IGR
arcZ
IGR
sRNA
chr
+
1642182
1642257
chr
+
3350672
3350698
30
5.5
clcA
arcZ
CDS
sRNA
chr
+
176257
176522
chr
+
3350679
3350697
16
7.7
fre
arcZ
CDS
sRNA
chr
+
4026721
4026877
chr
+
3350666
3350698
28
3.7
gcvH
arcZ
CDS
sRNA
chr
-
3049488
3049606
chr
+
3350644
3350697
141
1.7
valS
arcZ
CDS
sRNA
chr
-
4483797
4483850
chr
+
3350679
3350698
11
20.5
glpT
arcZ
CDS
sRNA
chr
-
2352281
2352372
chr
+
3350665
3350698
117
3.0
tnaC.tnaA.IGT
arcZ
IGT
sRNA
chr
+
3888478
3888977
chr
+
3350640
3350698
2003
7.8
fliF
arcZ
CDS
sRNA
chr
+
2014779
2014868
chr
+
3350663
3350698
56
3.8
uspA
arcZ
CDS
sRNA
chr
+
3640080
3640276
chr
+
3350674
3350698
112
4.4
clpS
arcZ
CDS
sRNA
chr
+
923078
923157
chr
+
3350677
3350698
33
9.5
ycbJ
arcZ
CDS
sRNA
chr
+
971805
971849
chr
+
3350668
3350698
19
8.4
ompT
arcZ
CDS
sRNA
chr
-
584916
585045
chr
+
3350662
3350698
43
3.3
glpK
arcZ
CDS
sRNA
chr
-
4117203
4117247
chr
+
3350624
3350697
83
4.1
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Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10