RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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E. coli K-12
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
mgrR
yqjA.5UTR
sRNA
5UTR
chr
-
1622855
1622866
chr
+
3247640
3247650
12
20.1
fnrS
yrdD
sRNA
CDS
chr
+
1409125
1409175
chr
-
3431380
3431563
476
12.8
fnrS
ytfJ.5UTR
sRNA
5UTR
chr
+
1409128
1409170
chr
-
4439192
4439285
29
6.2
mgrR
ytfK
sRNA
CDS
chr
-
1622880
1622915
chr
+
4439582
4439665
274
7.9
fnrS
ytfK
sRNA
CDS
chr
+
1409177
1409226
chr
+
4439778
4439895
402
1.9
mgrR
zapC.EST5UTR
sRNA
5UTR
chr
-
1622886
1622915
chr
+
1005874
1005931
13
18.7
fnrS
zwf
sRNA
CDS
chr
+
1409128
1409168
chr
-
1936279
1936330
40
14.5
1
...
45
46
47
48
49
50
51
52
Select an organism
Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10