RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
mgrR yqjA.5UTR sRNA 5UTR chr - 1622855 1622866 chr + 3247640 3247650 12 20.1
fnrS yrdD sRNA CDS chr + 1409125 1409175 chr - 3431380 3431563 476 12.8
fnrS ytfJ.5UTR sRNA 5UTR chr + 1409128 1409170 chr - 4439192 4439285 29 6.2
mgrR ytfK sRNA CDS chr - 1622880 1622915 chr + 4439582 4439665 274 7.9
fnrS ytfK sRNA CDS chr + 1409177 1409226 chr + 4439778 4439895 402 1.9
mgrR zapC.EST5UTR sRNA 5UTR chr - 1622886 1622915 chr + 1005874 1005931 13 18.7
fnrS zwf sRNA CDS chr + 1409128 1409168 chr - 1936279 1936330 40 14.5