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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
tdcB uhpT.EST3UTR CDS 3UTR chr - 3265060 3265136 chr - 3845731 3845756 103 27.9
fliC uhpT.EST3UTR CDS 3UTR chr - 2003478 2003677 chr - 3845730 3845777 1254 2.7
rapZ uhpT.EST3UTR CDS 3UTR chr + 3347201 3347287 chr - 3845731 3845746 13 18.2
ftnA.5UTR uhpT.EST3UTR 5UTR 3UTR chr + 1988482 1988741 chr - 3845731 3845751 37 4.8
tdcB.tdcA.IGT uhpT.EST3UTR IGT 3UTR chr - 3265988 3266168 chr - 3845731 3845753 84 6.2
nsrR uhpT.EST3UTR CDS 3UTR chr + 4406328 4406460 chr - 3845731 3845763 27 8.3
srlA uhpT.EST3UTR CDS 3UTR chr + 2825789 2826044 chr - 3845731 3845761 82 2.9
hemD uhpT.EST3UTR CDS 3UTR chr - 3989081 3989366 chr - 3845731 3845751 14 10.5
tar uhpT.EST3UTR CDS 3UTR chr - 1972402 1972468 chr - 3845731 3845749 26 5.1
rpmI.infC.IGT uhpT.EST3UTR IGT 3UTR chr - 1799987 1800155 chr - 3845731 3845774 148 11.5
glpT uhpT.EST3UTR CDS 3UTR chr - 2351539 2351744 chr - 3845731 3845761 125 2.9
tdcA uhpT.EST3UTR CDS 3UTR chr - 3266282 3266745 chr - 3845731 3845762 55 2.5
deoB.deoD.IGT uhpT.EST3UTR IGT 3UTR chr + 4620743 4620855 chr - 3845731 3845761 16 9.9
tnaA uhpT.EST3UTR CDS 3UTR chr + 3889278 3889475 chr - 3845731 3845769 183 11.4
fliA uhpT.EST3UTR CDS 3UTR chr - 2001096 2001264 chr - 3845731 3845751 31 4.8
ompF uhpT.EST3UTR CDS 3UTR chr - 985830 986158 chr - 3845731 3845767 121 4.6
tsx uhpT.EST3UTR CDS 3UTR chr - 431510 431973 chr - 3845731 3845762 36 4.7
thrU uhpT.EST3UTR tRNA 3UTR chr + 4175313 4175439 chr - 3845731 3845772 369 6.7
raiA uhpT.EST3UTR CDS 3UTR chr + 2737281 2737376 chr - 3845731 3845750 45 4.8
gcvB.ygdI.IGR uhpT.EST3UTR IGR 3UTR chr + 2942897 2943076 chr - 3845731 3845774 27 4.6