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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
micA tolB sRNA CDS chr + 2814800 2814837 chr + 778847 778976 271 3.8
micA tolB sRNA CDS chr + 2814800 2814837 chr + 778979 779137 134 1.9
fnrS trmJ sRNA CDS chr + 1409127 1409210 chr - 2663182 2663324 1451 12.1
trmJ.iscR.IGR trmJ IGR CDS chr - 2662129 2662267 chr - 2663273 2663456 25 38.0
ytfK trmJ CDS CDS chr + 4439781 4439831 chr - 2663312 2663317 15 7.2
fnrS tsaC sRNA CDS chr + 1409127 1409176 chr - 3431293 3431378 159 1.6
micA tsx.5UTR sRNA 5UTR chr + 2814801 2814837 chr - 432000 432059 75 8.5
rybB tsx.5UTR sRNA 5UTR chr - 888024 888058 chr - 432016 432053 51 3.8
srlA.5UTR tyrV 5UTR tRNA chr + 2825789 2825850 chr - 1287242 1287254 56 2.7
yejL uhpT CDS CDS chr + 2283984 2284166 chr - 3845731 3845766 47 160.3
lrhA uhpT CDS CDS chr - 2406585 2406674 chr - 3845731 3845775 42 13.0
waaA uhpT CDS CDS chr + 3809645 3809766 chr - 3845732 3845765 11 90.1
ygiA uhpT CDS CDS chr + 3179716 3179811 chr - 3845731 3845763 30 13.3
galU uhpT CDS CDS chr + 1291486 1291545 chr - 3845731 3845769 14 26.8
dcyD.5UTR uhpT 5UTR CDS chr - 1999495 1999531 chr - 3845731 3845776 44 8.2
mglB uhpT CDS CDS chr - 2240296 2240367 chr - 3845731 3845774 65 9.6
talB.5UTR uhpT 5UTR CDS chr + 8190 8191 chr - 3845732 3845803 12 37.6
uspE uhpT CDS CDS chr - 1398144 1398267 chr - 3845731 3845774 84 13.0
tnaB uhpT CDS CDS chr + 3890606 3890766 chr - 3845731 3845772 54 3.0
yaiL uhpT CDS CDS chr + 376780 377192 chr - 3845731 3845774 19 5.6