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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
yggX spf CDS sRNA chr + 3104091 3104162 chr + 4049923 4049966 16 12.2
lspA.fkpB.IGT spf IGT sRNA chr + 25804 25823 chr + 4049923 4049966 20 6.6
nanC.5UTR spf 5UTR sRNA chr - 4539508 4539656 chr + 4049923 4050009 82 5.1
srlA.5UTR spf 5UTR sRNA chr + 2825788 2826064 chr + 4049922 4049973 304 9.9
purH spf CDS sRNA chr - 4207279 4207528 chr + 4049930 4050007 29 8.9
glpF.5UTR spf 5UTR sRNA chr - 4118090 4118161 chr + 4049935 4050008 91 6.1
ispA spf CDS sRNA chr - 440611 440622 chr + 4049922 4049966 11 21.2
slyB.5UTR spf 5UTR sRNA chr + 1719757 1719783 chr + 4049930 4049966 24 60.7
fabR spf CDS sRNA chr + 4161678 4161755 chr + 4049905 4050007 73 15.2
insH-2.ybcQ.IGR spf IGR sRNA chr - 574484 574614 chr + 4049930 4050009 235 2.4
rsmH spf CDS sRNA chr + 90682 90900 chr + 4049929 4049966 40 11.6
sdhC.5UTR spf 5UTR sRNA chr + 755031 755149 chr + 4049921 4049944 16 7.6
sdaC spf CDS sRNA chr + 2929487 2929520 chr + 4049986 4050007 21 28.2
gcvT.5UTR spf 5UTR sRNA chr - 3050680 3050767 chr + 4049923 4049971 35 4.7
gcvH spf CDS sRNA chr - 3049518 3049573 chr + 4049930 4049966 76 4.5
yieE spf CDS sRNA chr + 3893892 3893910 chr + 4049924 4049944 10 23.3
polA spf CDS sRNA chr + 4048521 4048877 chr + 4049881 4049965 20 11.9
maeB.EST5UTR spf 5UTR sRNA chr - 2578404 2578455 chr + 4049963 4050007 19 13.4
galT spf CDS sRNA chr - 789965 790046 chr + 4049923 4049966 18 10.6
pntB spf CDS sRNA chr - 1674991 1675335 chr + 4049937 4049966 29 27.8