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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
yncE.5UTR ryhB 5UTR sRNA chr + 1523226 1523461 chr - 3580922 3580957 11 101.1
hybO ryhB CDS sRNA chr - 3146215 3146268 chr - 3580924 3580982 19 22.7
aspA ryhB CDS sRNA chr - 4366791 4367114 chr - 3580922 3580980 45 8.2
dcuA.5UTR ryjB.sgcQ.IGR 5UTR IGR chr - 4366787 4366896 chr + 4528094 4528115 22 84.5
flhD.5UTR secF.EST3UTR 5UTR 3UTR chr - 1978266 1978283 chr + 430508 430529 15 1075.3
pldB sgrS CDS sRNA chr + 4010079 4010106 chr + 77408 77594 37 144.2
ptsG.5UTR sgrS 5UTR sRNA chr + 1157766 1157872 chr + 77397 77594 168 249.4
manX sgrS CDS sRNA chr + 1901984 1902466 chr + 77391 77594 588 459.7
napD sgrS CDS sRNA chr - 2302752 2302844 chr + 77398 77594 88 108.6
yncL sieB.kilR.IGR CDS IGR chr - 1517060 1517113 chr - 1418405 1418451 18 575.0
paaJ spf CDS sRNA chr + 1461405 1461557 chr + 4049925 4050007 36 10.3
pyrL.5UTR spf 5UTR sRNA chr - 4472694 4472746 chr + 4049958 4050008 12 16.2
rnhA.5UTR spf 5UTR sRNA chr - 236022 236041 chr + 4049963 4050008 14 31.8
dhaK.5UTR spf 5UTR sRNA chr - 1250879 1250909 chr + 4049930 4049966 21 10.4
pspG.qor.IGR spf IGR sRNA chr + 4263157 4263213 chr + 4049923 4050007 80 7.2
tnaB spf CDS sRNA chr + 3891397 3891492 chr + 4049979 4050009 188 7.8
yjiA.yjiX.IGT spf IGT sRNA chr - 4588878 4588940 chr + 4049926 4049967 10 15.0
nagE spf CDS sRNA chr + 703982 704061 chr + 4049986 4050008 54 4.4
tdcB.tdcA.IGT spf IGT sRNA chr - 3266080 3266114 chr + 4049916 4050008 285 9.3
srlA.5UTR spf 5UTR sRNA chr + 2825788 2825846 chr + 4049980 4050008 166 3.6