RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ptsG.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
ptsG.5UTR EG10787.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 281 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 59 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 3 376 0.67 0.33 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
asnT tRNA Show interaction
sgrS sRNA Show interaction Show interaction Show interaction
ybjD CDS Show interaction