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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
flgM spf CDS sRNA chr - 1130119 1130158 chr + 4049922 4049969 72 14.8
lrp spf CDS sRNA chr + 932790 932955 chr + 4049923 4049971 21 6.6
mdh spf CDS sRNA chr - 3384125 3384278 chr + 4049923 4049966 33 7.1
sthA spf CDS sRNA chr - 4160712 4160819 chr + 4049912 4050007 21 6.8
tnaC.tnaA.IGT spf IGT sRNA chr + 3888580 3888677 chr + 4049925 4050009 435 5.6
fliT.3UTR spf 3UTR sRNA chr + 2006033 2006161 chr + 4049923 4049968 31 7.5
wzzB spf CDS sRNA chr - 2097332 2097568 chr + 4049953 4050008 19 7.2
gltA.5UTR spf 5UTR sRNA chr - 754528 754676 chr + 4049923 4049944 19 5.9
nanA spf CDS sRNA chr - 3373379 3373573 chr + 4049939 4050007 67 3.5
cysE spf CDS sRNA chr - 3782338 3782672 chr + 4049923 4049967 25 4.6
uspA spf CDS sRNA chr + 3640497 3640527 chr + 4049928 4049966 20 11.2
nanA spf CDS sRNA chr - 3372889 3373077 chr + 4049933 4049972 39 6.1
glpC spf CDS sRNA chr + 2356603 2356667 chr + 4049925 4050009 34 5.6
lpd spf CDS sRNA chr + 127901 127993 chr + 4049939 4050006 16 7.6
tdcC.tdcB.IGT spf IGT sRNA chr - 3265030 3265057 chr + 4049935 4049964 15 8.8
grcA.5UTR spf 5UTR sRNA chr - 2716295 2716509 chr + 4049923 4049971 48 5.2
tnaC.tnaA.IGT spf IGT sRNA chr + 3888409 3888575 chr + 4049923 4050008 160 2.3
tnaA spf CDS sRNA chr + 3888679 3888766 chr + 4049923 4049971 33 3.1
fnrS sucB sRNA CDS chr + 1409127 1409170 chr + 762681 762777 133 2.5
arcZ sucD sRNA CDS chr + 3350641 3350644 chr + 764219 764264 46 4.2