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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
yjdM sucD.EST3UTR CDS 3UTR chr - 4326717 4326775 chr + 765083 765150 93 18.4
ftnA.5UTR sucD.EST3UTR 5UTR 3UTR chr + 1988651 1988744 chr + 765081 765149 299 14.9
fdoG sucD.EST3UTR CDS 3UTR chr - 4085496 4085965 chr + 764818 765150 1570 28.3
ydiJ sucD.EST3UTR CDS 3UTR chr - 1768580 1768670 chr + 765084 765149 12 17.9
yfbV.ackA.IGR sucD.EST3UTR IGR 3UTR chr + 2413416 2413477 chr + 765082 765150 58 26.7
yghD.yghF.IGR sucD.EST3UTR IGR 3UTR chr + 3111282 3111716 chr + 765086 765148 21 10.9
yehS sucD.EST3UTR CDS 3UTR chr - 2212095 2212159 chr + 765084 765149 19 6.3
rcsF sucD.EST3UTR CDS 3UTR chr - 219939 220014 chr + 765084 765149 21 20.5
lpxA sucD.EST3UTR CDS 3UTR chr + 202569 202789 chr + 765083 765149 47 9.4
fdoG sucD.EST3UTR CDS 3UTR chr - 4085106 4085443 chr + 765082 765148 21 6.3
oxyS tdcA sRNA CDS chr - 4158318 4158396 chr - 3266111 3266116 22 26.4
spf tdcB.tdcA.IGT sRNA IGT chr + 4049898 4049971 chr - 3265986 3266077 142 3.9
fliC tdcG CDS CDS chr - 2003300 2003376 chr - 3258235 3258278 48 4.1
ompA tdcG CDS CDS chr - 1019923 1020077 chr - 3258234 3258272 23 5.8
fnrS tdcG.yhaO.IGR sRNA IGR chr + 1409126 1409173 chr - 3257979 3258118 1611 2.3
gcvB thrL.5UTR sRNA 5UTR chr + 2942695 2942860 chr + 127 199 308 1.6
uhpT thrU CDS tRNA chr - 3845761 3845863 chr + 4175431 4175466 104 3.2
arcZ tnaA sRNA CDS chr + 3350613 3350663 chr + 3888983 3889071 78 4.6
yfdK.yfdI.IGR tnaC.tnaA.IGT IGR IGT chr - 2470584 2470628 chr + 3888509 3888551 26 65.0
ompF tnaC.tnaA.IGT CDS IGT chr - 986879 986968 chr + 3888473 3888576 39 4.9