Site logo

RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Huji Logo
Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
udp uhpT CDS CDS chr + 4016396 4016561 chr - 3845731 3845942 85 3.5
moaC uhpT CDS CDS chr + 818589 818766 chr - 3845734 3845775 10 18.0
dnaA uhpT CDS CDS chr - 3883429 3883760 chr - 3845731 3845821 17 6.2
fliI uhpT CDS CDS chr + 2016706 2016819 chr - 3845732 3845772 20 21.3
fliF uhpT CDS CDS chr + 2014705 2014869 chr - 3845731 3845774 37 3.7
sfsA uhpT CDS CDS chr - 160735 161124 chr - 3845731 3845761 19 14.2
pyrG uhpT CDS CDS chr - 2908222 2908507 chr - 3845731 3845768 17 7.2
pnp uhpT CDS CDS chr - 3311045 3311250 chr - 3845731 3845769 16 7.7
flgN uhpT CDS CDS chr - 1129684 1130071 chr - 3845730 3845769 83 2.3
flgC uhpT CDS CDS chr + 1131419 1131472 chr - 3845732 3845774 14 10.6
fliC uhpT CDS CDS chr - 2002981 2003171 chr - 3845731 3845773 126 2.6
glpK uhpT CDS CDS chr - 4115618 4115775 chr - 3845731 3845868 85 9.9
fusA.rpsG.IGT uhpT IGT CDS chr - 3473505 3473562 chr - 3845732 3845772 13 9.7
rpsG uhpT CDS CDS chr - 3473685 3474117 chr - 3845731 3845772 31 5.1
yghJ.EST5UTR uhpT.EST3UTR 5UTR 3UTR chr - 3119142 3119297 chr - 3845731 3845766 199 126.2
yfaY uhpT.EST3UTR CDS 3UTR chr - 2363499 2363578 chr - 3845729 3845750 64 162.4
ydjX.AS uhpT.EST3UTR AS 3UTR chr - 1833621 1833832 chr - 3845731 3845751 32 67.7
yfiP uhpT.EST3UTR CDS 3UTR chr + 2719204 2719291 chr - 3845730 3845751 28 33.4
yqjC uhpT.EST3UTR CDS 3UTR chr + 3248987 3249058 chr - 3845731 3845761 40 308.3
ysaA uhpT.EST3UTR CDS 3UTR chr - 3741489 3741729 chr - 3845731 3845756 102 94.5