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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gnsB uhpT.EST3UTR CDS 3UTR chr - 1637680 1637768 chr - 3845731 3845751 127 12.7
zapD uhpT.EST3UTR CDS 3UTR chr - 111912 111967 chr - 3845731 3845763 17 72.3
uspD uhpT.EST3UTR CDS 3UTR chr + 4113680 4113767 chr - 3845732 3845752 14 57.1
nanT uhpT.EST3UTR CDS 3UTR chr - 3372321 3372472 chr - 3845731 3845751 106 43.3
nlpD uhpT.EST3UTR CDS 3UTR chr - 2868708 2868877 chr - 3845730 3845762 23 24.4
yqjA.5UTR uhpT.EST3UTR 5UTR 3UTR chr + 3247709 3247764 chr - 3845731 3845751 17 7.9
ucpA uhpT.EST3UTR CDS 3UTR chr - 2543791 2543863 chr - 3845731 3845750 68 31.5
htrL uhpT.EST3UTR CDS 3UTR chr - 3793351 3793423 chr - 3845732 3845751 17 23.0
ribF uhpT.EST3UTR CDS 3UTR chr + 21818 21850 chr - 3845731 3845751 14 13.7
malK uhpT.EST3UTR CDS 3UTR chr + 4247740 4247965 chr - 3845731 3845774 171 10.3
fliP uhpT.EST3UTR CDS 3UTR chr + 2022123 2022166 chr - 3845732 3845750 14 37.2
nagE uhpT.EST3UTR CDS 3UTR chr + 703986 704051 chr - 3845731 3845761 39 11.8
ubiC uhpT.EST3UTR CDS 3UTR chr + 4252622 4252711 chr - 3845731 3845749 12 13.5
bglX.5UTR uhpT.EST3UTR 5UTR 3UTR chr - 2221682 2222041 chr - 3845731 3845751 13 11.0
motB uhpT.EST3UTR CDS 3UTR chr - 1975879 1975968 chr - 3845731 3845756 58 3.3
ypfM.5UTR uhpT.EST3UTR 5UTR 3UTR chr - 2590879 2590971 chr - 3845731 3845750 140 3.9
nanC.5UTR uhpT.EST3UTR 5UTR 3UTR chr - 4539594 4539677 chr - 3845731 3845751 19 9.5
cspF.ydfT.IGR uhpT.EST3UTR IGR 3UTR chr + 1642182 1642527 chr - 3845732 3845751 40 16.6
rpsG uhpT.EST3UTR CDS 3UTR chr - 3473579 3473675 chr - 3845731 3845751 136 79.3
yjjI uhpT.EST3UTR CDS 3UTR chr - 4616945 4617093 chr - 3845731 3845749 35 28.5