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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
tnaA uhpT.EST3UTR CDS 3UTR chr + 3888999 3889064 chr - 3845731 3845775 36 5.7
tnaC.tnaA.IGT uhpT.EST3UTR IGT 3UTR chr + 3888479 3888876 chr - 3845731 3845755 158 3.1
rpmG uhpT.EST3UTR CDS 3UTR chr - 3811330 3811676 chr - 3845731 3845751 24 5.9
spf waaL sRNA CDS chr + 4049906 4049971 chr + 3797609 3797625 33 12.7
gcvB waaP sRNA CDS chr + 2942695 2942770 chr - 3805107 3805161 77 2.9
insH-7.gnd.IGR wbbK.insH-7.IGR IGR IGR chr - 2101405 2101773 chr - 2102954 2103324 12 92.8
dmsA xylB.xylA.IGT CDS IGT chr + 941023 941162 chr - 3729386 3729409 37 185.6
rpsJ xylB.xylA.IGT CDS IGT chr - 3453032 3453267 chr - 3729386 3729408 13 13.3
narK yajO.dxs.IGT CDS IGT chr + 1279288 1279439 chr - 438147 438161 14 10.9
fnrS ybfA sRNA CDS chr + 1409128 1409159 chr + 729138 729161 28 5.3
fliC ybiJ.EST3UTR CDS 3UTR chr - 2003203 2003653 chr - 837624 837626 28 10.8
cfa.5UTR ybiJ.ybiC.IGR 5UTR IGR chr + 1741227 1741269 chr - 837435 837457 28 76.9
nlpD ybiJ.ybiC.IGR CDS IGR chr - 2867623 2867769 chr - 837435 837479 20 17.4
nagE.5UTR ybiJ.ybiC.IGR 5UTR IGR chr + 703885 703959 chr - 837435 837456 10 36.4
ompC.5UTR ybiJ.ybiC.IGR 5UTR IGR chr - 2312788 2312847 chr - 837435 837480 61 113.4
ompF ybiJ.ybiC.IGR CDS IGR chr - 986680 987093 chr - 837435 837461 168 21.0
mgrR ycbZ sRNA CDS chr - 1622859 1622915 chr - 1018204 1018269 12 14.9
spf ycfJ sRNA CDS chr + 4049898 4049945 chr + 1168148 1168195 55 2.8
gcvH ycfJ.EST3UTR CDS 3UTR chr - 3049152 3049565 chr + 1168187 1168194 14 8.5
arcZ yciF.AS sRNA AS chr + 3350641 3350649 chr + 1315326 1315362 14 23.5