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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
rpsJ.5UTR yjgZ.insG.IGR 5UTR IGR chr - 3453281 3453377 chr + 4502102 4502127 42 11.4
spf yjiA sRNA CDS chr + 4049900 4049941 chr - 4588804 4588853 31 10.3
yjtD.thrL.IGR yjtD IGR CDS chr + 1 242 chr + 4641217 4641622 43 78.0
yjtD yjtD.thrL.IGR CDS IGR chr + 4641198 4641628 chr + 26 270 51 99.4
essD.5UTR ykgH.EST3UTR 5UTR 3UTR chr + 577229 577241 chr - 324603 324632 29 211.8
ydfK.5UTR ykgH.EST3UTR 5UTR 3UTR chr + 1632714 1632726 chr - 324602 324629 89 323.1
mgtL.mgtA.IGT ykgH.EST3UTR IGT 3UTR chr + 4467488 4467562 chr - 324601 324633 177 65.3
minD ykgH.EST3UTR CDS 3UTR chr - 1225336 1225353 chr - 324602 324629 124 228.0
uspF.ynaE.IGR ykgH.EST3UTR IGR 3UTR chr - 1434402 1434583 chr - 324602 324634 284 86.9
rbsD ykgH.EST3UTR CDS 3UTR chr + 3933700 3933786 chr - 324602 324619 34 30.7
nrfA ykgH.EST3UTR CDS 3UTR chr + 4287779 4287835 chr - 324602 324608 29 6.3
fliC ykgH.EST3UTR CDS 3UTR chr - 2002733 2002813 chr - 324603 324635 60 2.6
ybcM ymfH CDS CDS chr + 572217 572289 chr - 1201195 1201234 22 482.6
mepS.5UTR ymfH 5UTR CDS chr + 2269909 2269946 chr - 1201195 1201222 49 331.0
flhD ymfH CDS CDS chr - 1978141 1978160 chr - 1201195 1201232 10 42.9
gcvB ynaE.EST5UTR sRNA 5UTR chr + 2942695 2942772 chr - 1434225 1434275 96 2.1
mcaS yncL.EST3UTR sRNA 3UTR chr - 1405703 1405752 chr - 1517036 1517074 75 3.8
fnrS yobA sRNA CDS chr + 1409126 1409175 chr - 1924777 1925027 697 7.9
ompF yodB.serU.IGR CDS IGR chr - 986846 986969 chr + 2043140 2043181 39 3.0
arcZ ypfM sRNA CDS chr + 3350576 3350666 chr - 2590756 2590873 883 5.9