RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

essD.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
essD.5UTR G6309.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 29 0.00 -1.00 6
Stat. Phase (Melamed et al. 2016) 1 23 0.00 -1.00 6
Iron Limitation (Melamed et al. 2016) 2 37 0.50 0.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
hupB CDS Show interaction
ykgH.EST3UTR 3UTR Show interaction Show interaction Show interaction