RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ydfK.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
ydfK.5UTR G6818.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 89 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 2 51 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 1 28 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
raiA CDS Show interaction
ykgH.EST3UTR 3UTR Show interaction Show interaction Show interaction