RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yjtD.thrL.IGR

Flanking gene IDs:

  • EG12309
  • EG11277

Summary:

Name ID Genomic annotation Chromosome Strand
yjtD.thrL.IGR EG12309.EG11277.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 94 1.00 0.00 0
Stat. Phase (Melamed et al. 2016) 1 11 1.00 0.00 0
Iron Limitation (Melamed et al. 2016) 1 76 1.00 0.00 0

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
yjtD CDS Show interaction Show interaction Show interaction