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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
fliC.fliA.IGR ydcP.EST3UTR IGR 3UTR chr - 2002011 2002168 chr + 1508823 1508827 21 118.9
ompC.5UTR ydfC.dicF.IGR 5UTR IGR chr - 2312781 2312830 chr + 1649275 1649439 32 5.4
arcZ ydfW.flxA.IGR sRNA IGR chr + 3350641 3350657 chr - 1647050 1647078 87 11.0
gcvB ydiJ.EST5UTR sRNA 5UTR chr + 2942695 2942776 chr - 1768677 1768759 62 3.1
yfbV.EST3UTR yfbT 3UTR CDS chr - 2412619 2412629 chr - 2411395 2411601 10 44.8
tnaC.tnaA.IGT yfdK.yfdI.IGR IGT IGR chr + 3888479 3888519 chr - 2470542 2470637 13 22.1
der yfgJ CDS CDS chr - 2636632 2636904 chr - 2635284 2635775 11 552.7
gcvB yfhM sRNA CDS chr + 2942695 2942752 chr - 2651780 2651877 27 4.1
mgrR ygdQ sRNA CDS chr - 1622857 1622875 chr + 2970449 2970651 27 12.3
ompA.5UTR yggN.5UTR 5UTR 5UTR chr - 1020031 1020165 chr - 3101637 3101658 13 13.1
gcvB yggX.mltC.IGT sRNA IGT chr + 2942695 2942776 chr + 3104383 3104478 334 3.0
fnrS yhbU sRNA CDS chr + 1409128 1409173 chr + 3301470 3301557 50 7.7
ompC.5UTR yhcN 5UTR CDS chr - 2312781 2312830 chr + 3385545 3385852 26 22.2
sbmA yhcN.EST3UTR CDS 3UTR chr + 396652 396715 chr + 3385825 3385853 45 164.9
yhjH yhjG CDS CDS chr - 3678787 3679229 chr - 3677378 3677876 41 83.4
yhjG yhjH CDS CDS chr - 3677302 3677765 chr - 3678729 3679164 43 106.0
arcZ yiaV.AS sRNA AS chr + 3350641 3350643 chr + 3753492 3753525 20 38.1
gcvB yifK sRNA CDS chr + 2942695 2942753 chr + 3980800 3980934 96 2.0
fnrS yjbB.5UTR sRNA 5UTR chr + 1409128 1409175 chr + 4227629 4227768 82 2.3
tsx.5UTR yjfY.EST3UTR 5UTR 3UTR chr - 432049 432076 chr - 4424450 4424474 21 1075.9