RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ydfC.dicF.IGR

Flanking gene IDs:

  • EG11302
  • EG31115

Summary:

Name ID Genomic annotation Chromosome Strand
ydfC.dicF.IGR EG11302.EG31115.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 80 1.00 0.00 5
Stat. Phase (Melamed et al. 2016) 1 135 1.00 0.00 5
Iron Limitation (Melamed et al. 2016) 1 231 1.00 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ompC.5UTR 5UTR Show interaction Show interaction Show interaction